PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604907.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 333aa    MW: 37407.7 Da    PI: 5.1747
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +v+++G g W+t +++ g++R++k+c++rw +yl
   XP_013604907.1 15 KGAWTPEEDQKLVSYVNRHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 62
                     79********************************************97 PP

2Myb_DNA-binding50.93.5e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T++E+  ++ +++++G++ W++Iar ++ gRt++++k++w+++
   XP_013604907.1  68 RGEFTEDEECSIISLHALHGNK-WAAIARGLP-GRTDNEIKNHWNTH 112
                      899*******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7781062IPR017930Myb domain
SuperFamilySSF466892.13E-2912109IPR009057Homeodomain-like
SMARTSM007172.7E-131464IPR001005SANT/Myb domain
PfamPF002491.3E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-231669IPR009057Homeodomain-like
CDDcd001671.16E-91762No hitNo description
PROSITE profilePS5129424.80763117IPR017930Myb domain
SMARTSM007179.1E-1667115IPR001005SANT/Myb domain
PfamPF002491.0E-1468112IPR001005SANT/Myb domain
CDDcd001674.19E-1170113No hitNo description
Gene3DG3DSA:1.10.10.609.1E-2570118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009625Biological Processresponse to insect
GO:0009651Biological Processresponse to salt stress
GO:0009682Biological Processinduced systemic resistance
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009759Biological Processindole glucosinolate biosynthetic process
GO:0052544Biological Processdefense response by callose deposition in cell wall
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVRTPCCKAE LGLKKGAWTP EEDQKLVSYV NRHGEGGWRT LPEKAGLKRC GKSCRLRWAN  60
YLRPDIKRGE FTEDEECSII SLHALHGNKW AAIARGLPGR TDNEIKNHWN THIKKRLIKK  120
GVDPVTHKSL ISDKSENFPE IPEKQNVIQT IITSEDDLDN EKVKNSNKKP VLSSAKFLNR  180
VANRFGKRIN QSVLSEIIGS GGPLTTTTTS HTATTTSVTV NSESDKSTSS SFTPTSDLLC  240
QMTVNGNATS SPSTFSDASV NDSLMYCDNE DNLGFSNFLN DEDFMMLEES CVDNTEFMKE  300
LSRFLEEDVN DDVEVMHVYE HQDNIEDIDN YFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28131175108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00147DAPTransfer from AT1G18570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6701190.0KJ670119.1 Brassica napus MYB transcription factor 51 (MYB51.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013727091.10.0PREDICTED: transcription factor MYB51-like
RefseqXP_013604907.10.0PREDICTED: transcription factor MYB51-like
SwissprotO497821e-162MYB51_ARATH; Transcription factor MYB51
TrEMBLA0A078D3730.0A0A078D373_BRANA; BnaC08g18090D protein
TrEMBLA0A0D3DQ770.0A0A0D3DQ77_BRAOL; Uncharacterized protein
STRINGBra016553.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18570.11e-154myb domain protein 51